So.. After you've run the scan, you've found yet another false positive in Nessus due to the idiosyncracies of your environment. Here is a script to purge a particular plugin from a Nessus report so you don't have to redo the scan after fixing your scan parameters.
nsfix.py
This may work on OpenVAS reports, let me know if it causes a problem. As always, improvements are welcome.
Updated: pauldotcom from Twitter makes an excellent point that this can be achieved using the "Report Filters" interface. I blame my fear of flash guis for not finding this.
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This can be done in a .nbe file with a simple: grep -v '|111111|' input.nbe with 111111 being the plugin ID
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